Tapio Ala Nissilä

Peer-reviewed scientific articles

Journal article-refereed, Original research

Influence of particle properties on convective heat transfer of nanofluids

Mikkola, V.; Puupponen, S.; Granbohm, H.; Saari, K.; Ala-Nissila, T.; Seppälä, A.

2018 in INTERNATIONAL JOURNAL OF THERMAL SCIENCES (Elsevier Masson SAS)

ISSN: 1290-0729

Controlled propulsion and separation of helical particles at the nanoscale

Alcanzare, Maria; Thakore, Vaibhav; Ollila, Santtu; Karttunen, Mikko; Ala-Nissilä, Tapio

2017 in SOFT MATTER (ROYAL SOC CHEMISTRY)

ISSN: 1744-683X

Propulsion and controlled steering of magnetic nanohelices

Alcanzare, Maria; Karttunen, Mikko; Ala-Nissilä, Tapio

2017 in ARXIV (ROYAL SOC CHEMISTRY)

Kapitza thermal resistance across individual grain boundaries in graphene

Azizi, Khatereh; Hirvonen, Petri; Fan, Zheyong; Harju, Ari; Elder, Ken; Ala-Nissilä, Tapio; Vaez Allaei, S. Mehdi

2017 in CARBON (PERGAMON-ELSEVIER SCIENCE LTD)

ISSN: 0008-6223

Perfect quantum excitation energy transport via single edge perturbation in a complete network

Bassereh, Hassan; Salari, Vahid; Shahbazi, Farhad; Ala-Nissilä, Tapio

2017 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

ISSN: 1434-6028

Controlling polymer capture and translocation by electrostatic polymer-pore interactions

Buyukdagli, Sahin; Ala-Nissila, T.

2017 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Shear viscosity in hard-sphere and adhesive colloidal suspensions with reverse non-equilibrium molecular dynamics

Cerbelaud, Manuella; Maria Laganapan, Aleena; Ala-Nissilä, Tapio; Ferrando, Riccardo; Videcoq, Arnaud

2017 in SOFT MATTER (ROYAL SOC CHEMISTRY)

ISSN: 1744-683X

Thermal conductivity decomposition in two-dimensional materials Application to graphene

Fan, Zheyong; Pereira, Luiz Felipe C; Hirvonen, Petri; Ervasti, Mikko M.; Elder, Ken R.; Donadio, Davide; Ala-Nissilä, Tapio; Harju, Ari

2017 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Bimodal Grain-Size Scaling of Thermal Transport in Polycrystalline Graphene from Large-Scale Molecular Dynamics Simulations

Fan, Zheyong; Hirvonen, Petri; Pereira, Luiz Felipe C; Ervasti, Mikko; Elder, Ken R.; Donadio, Davide; Harju, Ari; Ala-Nissilä, Tapio

2017 in NANO LETTERS (AMER CHEMICAL SOC)

ISSN: 1530-6984

Quantifying non-Markovianity due to driving and a finite-size environment in an open quantum system

Ferreira Sampaio, Rui; Suomela, Samu; Schmidt, Rebecca; Ala-Nissilä, Tapio

2017 in PHYSICAL REVIEW A (AMER PHYSICAL SOC)

ISSN: 2469-9926

Energetics and structure of grain boundary triple junctions in graphene

Hirvonen, Petri; Fan, Zheyong; Ervasti, Mikko M.; Harju, Ari; Elder, Ken R.; Ala-Nissilä, Tapio

2017 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Atomic Scale Formation Mechanism of Edge Dislocation Relieving Lattice Strain in a GeSi overlayer on Si(001)

Maras, E.; Pizzagalli, L.; Ala-Nissilä, Tapio; Jónsson, H.

2017 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Thermal properties and convective heat transfer of phase changing paraffin nanofluids

Mikkola, Valtteri; Puupponen, Salla; Saari, Kari; Ala-Nissilä, Tapio; Seppälä, Ari

2017 in INTERNATIONAL JOURNAL OF THERMAL SCIENCES (Elsevier Masson SAS)

ISSN: 1290-0729

Driven translocation of a semi-flexible polymer through a nanopore

Sarabadani, Jalal; Ikonen, Timo; Mökkönen, Harri; Ala-Nissilä, Tapio; Carson, Spencer; Wanunu, Meni

2017 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Plasmonically Enhanced Reflectance of Heat Radiation from Low-Bandgap Semiconductor Microinclusions

Tang, Janika; Thakore, Vaibhav; Ala-Nissilä, Tapio

2017 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Efficient protocol for qubit initialization with a tunable environment

Tuorila, Jani; Partanen, Matti; Ala-Nissila, Tapio; Mottonen, Mikko

2017 in npj Quantum Information (NATURE PUBLISHING GROUP)

ISSN: 2056-6387

Shape and scale dependent diffusivity of colloidal nanoclusters and aggregates

Alcanzare, M. M T; Ollila, S. T. T.; Thakore, V.; Laganapan, A. M.; Videcoq, A.; Cerbelaud, M.; Ferrando, R.; Ala-Nissilä, Tapio

2016 in EUROPEAN PHYSICAL JOURNAL: SPECIAL TOPICS (Springer Verlag)

ISSN: 1951-6355

Electrostatic energy barriers from dielectric membranes upon approach of translocating DNA molecules

Buyukdagli, Sahin; Ala-Nissilä, Tapio

2016 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Electrostatics of polymer translocation events in electrolyte solutions

Buyukdagli, Sahin; Ala-Nissilä, Tapio

2016 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Honeycomb and triangular domain wall networks in heteroepitaxial systems

Elder, K. R.; Chen, Z.; Elder, K. L M; Hirvonen, Petri; Mkhonta, S. K.; Ying, S. C.; Granato, E.; Huang, Zhi Feng; Ala-Nissilä, Tapio

2016 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Commensurate-incommensurate transition and domain wall dynamics of adsorbed overlayers on a honeycomb substrate

Elder, K. R.; Achim, C. V.; Granato, E.; Ying, S. C.; Ala-Nissilä, Tapio

2016 in EPL (IOP Publishing Ltd.)

ISSN: 0295-5075

Mass transport of adsorbates near a discontinuous structural phase transition

Granato, E.; Ying, S. C.; Elder, K. R.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Long-wavelength properties of phase-field-crystal models with second-order dynamics

Heinonen, V.; Achim, C. V.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Consistent Hydrodynamics for Phase Field Crystals

Heinonen, V.; Achim, C. V.; Kosterlitz, J. M.; Ying, See-Chen; Lowengrub, J.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Multiscale modeling of polycrystalline graphene A comparison of structure and defect energies of realistic samples from phase field crystal models

Hirvonen, Petri; Ervasti, Mikko M.; Fan, Zheyong; Jalalvand, Morteza; Seymour, Matthew; Vaez Allaei, S. Mehdi; Provatas, Nikolas; Harju, Ari; Elder, Ken R.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Thermodynamics and efficiency of an autonomous on-chip Maxwell's demon

Kutvonen, Aki; Koski, Jonne; Ala-Nissila, Tapio

2016 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Thermodynamics of information exchange between two coupled quantum dots

Kutvonen, Aki; Sagawa, Takahiro; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Global transition path search for dislocation formation in Ge on Si(001)

Maras, E.; Trushin, O.; Stukowski, A.; Ala-Nissilä, Tapio; Jónsson, H.

2016 in COMPUTER PHYSICS COMMUNICATIONS (Elsevier Science B.V.)

ISSN: 0010-4655

Efficient dynamical correction of the transition state theory rate estimate for a flat energy barrier

Mökkönen, Harri; Ala-Nissilä, Tapio; Jónsson, Hannes

2016 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Novel microstructured polyol-polystyrene composites for seasonal heat storage

Puupponen, Salla; Mikkola, Valtteri; Ala-Nissilä, Tapio; Seppälä, Ari

2016 in APPLIED ENERGY (ELSEVIER SCI LTD)

ISSN: 0306-2619

Calorimetric measurement of work for a driven harmonic oscillator

Sampaio, Rui; Suomela, Samu; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Heat flux and information backflow in cold environments

Schmidt, R.; Maniscalco, S.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW A (AMER PHYSICAL SOC)

ISSN: 1050-2947

Comparison between quantum jumps and master equation in the presence of a finite environment

Suomela, S.; Sampaio, R.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Quantum jump model for a system with a finite-size environment

Suomela, S.; Kutvonen, A.; Ala-Nissilä, Tapio

2016 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 2470-0045

Minimum energy path for the nucleation of misfit dislocations in Ge/Si(0 0 1) heteroepitaxy

Trushin, O.; Maras, E.; Stukowski, A.; Granato, E.; Ying, S. C.; Jónsson, H.; Ala-Nissilä, Tapio

2016 in MODELLING AND SIMULATION IN MATERIALS SCIENCE AND ENGINEERING (IOP Publishing Ltd.)

ISSN: 0965-0393

Shape effects on surface plasmons in spherical, cubic, and rod-shaped silver nanoparticles

Tzarouchis, Dimitrios C.; Ylä-Oijala, Pasi; Ala-Nissilä, Tapio; Sihvola, Ari

2016 in APPLIED PHYSICS A-MATERIALS SCIENCE AND PROCESSING (Springer Heidelberg)

ISSN: 0947-8396

Plasmonic properties and energy flow in rounded hexahedral and octahedral nanoparticles

Tzarouchis, Dimitrios; Ylä-Oijala, Pasi; Ala-Nissilä, Tapio; Sihvola, Ari

2016 in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B: OPTICAL PHYSICS (OPTICAL SOC AMER)

ISSN: 0740-3224

On the applicability of discrete dipole approximation for plasmonic particles

Vartia, Olli S.; Ylä-Oijala, Pasi; Markkanen, Johannes; Puupponen, Salla; Seppälä, Ari; Sihvola, Ari; Ala-Nissilä, Tapio

2016 in JOURNAL OF QUANTITATIVE SPECTROSCOPY AND RADIATIVE TRANSFER (Elsevier Limited)

ISSN: 0022-4073

Ionic current inversion in pressure-driven polymer translocation through nanopores

Buyukdagli, S.; Blossey, R.; Ala-Nissila, Tapio

2015 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Quantum treatment of the Bose-Einstein condensation in non-equilibrium systems

Flayac, H.; Savenko, Ivan; Möttönen, Mikko; Ala-Nissila, Tapio

2015 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

On-Chip Maxwell's Demon as an Information-Powered Refrigerator

Koski, Jonne; Kutvonen, A.; Khaymovich, Ivan; Ala-Nissila, T.; Pekola, Jukka

2015 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Entropy production in a non-Markovian environment

Kutvonen, A.; Ala-Nissila, T.; Pekola, J.

2015 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 2470-0045

Computation of shear viscosity of colloidal suspensions by SRD-MD Ala-Nissila, T.

Laganapan, AMK; Videcoq, A; Bienia, M; Ala-Nissila, T; Bochicchio, D; Ferrando, R

2015 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Improved tight-binding charge transfer model and calculations of energetics of a step on the rutile TiO2(110) surface

Maras, Emile; Salles, N.; Tétot, R.; Ala-Nissila, Tapio; Jónsson, Hannes

2015 in Journal of Physical Chemistry C (AMER CHEMICAL SOC)

ISSN: 1932-7447

Transition State Theory Approach to Polymer Escape from a One Dimensional Potential Well

Mökkönen, Harri; Ikonen, T.; Ala-Nissila, Tapio; Jonsson, Hannes

2015 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Preparation of paraffin and fatty acid phase changing nanoemulsions for heat transfer

Puupponen, Salla; Seppälä, Ari; Vartia, Olli; Saari, Kari; Ala-Nissilä, Tapio

2015 in THERMOCHIMICA ACTA (Elsevier Science B.V.)

ISSN: 0040-6031

Preparation of Paraffin and Fatty Acid Nanofluids for Heat Transfer Applications

Puupponen, S.; Seppälä, A.; Vartia, O.; Saari, K.; Ala-Nissila, Tapio

2015 in THERMOCHIMICA ACTA (Elsevier Science B.V.)

ISSN: 0040-6031

Turbulent heat transfer characteristics in a circular tube and thermal properties of n-decane-in-water nanoemulsion fluids and micelles-in-water fluids

Saarinen, Sampo; Puupponen, Salla; Meriläinen, Arttu; Joneidi, Ali; Seppälä, Ari; Saari, Kari; Ala-Nissilä, Tapio

2015 in International Journal of Heat and Mass Transfer (PERGAMON-ELSEVIER SCIENCE LTD)

ISSN: 0017-9310

Theory of polymer translocation through a flickering nanopore under an alternating driving force

Sarabadani, Jalal; Ikonen, T.; Ala-Nissila, Tapio

2015 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Virtual enclosure model for thermal radiation extinction inside porous materials with closed cell structure

Seppälä, Ari; Vartia, Olli; Seppälä, Pyry; Saari, Kari; Noponen, Tuula; Ala-Nissilä, Tapio

2015 in INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER (Elsevier Limited)

ISSN: 0017-9310

Fluctuations of work in nearly adiabatically driven open quantum systems

Suomela, Samu; Salmilehto, Juha; Savenko, Ivan; Ala-Nissila, Tapio; Möttönen, Mikko

2015 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 2470-0045

Atomic mechanisms of strain relaxation in heteroepitaxial Cu/Ni(001) system

Trushin, O. S.; Kupryanov, A. N.; Ying, S. C.; Granato, E.; Ala-Nissilä, Tapio

2015 in Russian Microelectronics (Maik Nauka-Interperiodica Publishing)

ISSN: 1063-7397

Controlling polymer translocation and ion transport via charge correlations

Buyukdagli, S.; Ala-Nissilä, T.

2014 in LANGMUIR (AMER CHEMICAL SOC)

ISSN: 0743-7463

Electrostatic correlations on the ionic selectivity of cylindrical membrane nanopores

Buyukdagli, Sahin; Ala-Nissilä, Tapio

2014 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Phase-field-crystal models and mechanical equilibrium

Heinonen, V.; Achim, C.V.; Elder, Ken; Buyuddagli, S.; Ala-Nissila, T.

2014 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Influence of high-refractive-index oxide cores on optical properties of metal nanoshells

Laaksonen, K.; Suomela, S.; Puisto, S. R.; Rostedt, N. K J; Ala-Nissilä, Tapio; Nieminen, R. M.

2014 in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B: OPTICAL PHYSICS (OPTICAL SOC AMER)

ISSN: 0740-3224

Infuence of high-refractive-index oxide cores on optical properties of thin metal nanoshells

Laaksonen, K.; Suomela, S.; Puisto, S.R.; Rostedt, N.K.J.; Ala-Nissila, T.; Nieminen, R.M.

2014 in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B: OPTICAL PHYSICS (OPTICAL SOC AMER)

ISSN: 0740-3224

Nanoparticles of TiO2 and VO2 in dielectric media: Conditions for low optical scattering, and comparison between effective medium and four-flux theories

Laaksonen, K.; Li, S.-Y.; Puisto, S.R.; Rostedt, N.K.J.; Ala-Nissila, T.; Granqvist, C.G.; Nieminen, R.; Niklasson, G.A.

2014 in Solar Energy Materials and Solar Cells (Elsevier Science B.V.)

ISSN: 0927-0248

Stretching of DNA confined in nanochannels with charged walls

Manneschi, C.; Fanzio, P.; Ala-Nissila, T.; Angeli, E.; Repetto, L.; Firpo, G.; Valbusa, U.

2014 in BIOMICROFLUIDICS (American Institute of Physics)

Polymer escape from a confining potential

Mökkönen, Harri; Ikonen, Timo; Jonsson, Hannes; Ala-Nissilä, Tapio

2014 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Biopolymer Filtration in Corrugated Nanochannels

Ollila, S.T.T.; Denniston, C.; Karttunen, M.; Ala-Nissila, T.

2014 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Iso-Flux Tension Propagation Theory of Driven Polymer Translocation: The Role of Initial Configurations

Sarabadani, J.; Ikonen, T.; Ala-Nissila, T.

2014 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Moments of work in the two-point measurement protocol for a driven open quantum system

Suomela, S.; Solinas, P.; Pekola, J.P.; Ankerhold, J.; Ala-Nissila, T.

2014 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Microscopic formulation of non-local electrostatics in polar liquids embedding polarizable ions

Buyukdagli, Sahin; Ala-Nissilä, Tapio

2013 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Alteration of gas phase ion polarizabilities upon hydration in high dielectric liquids

Buyukdagli, Sahin; Ala-Nissilä, Tapio

2013 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Modeling Self-Organization of Thin Strained Metallic Overlayers from Atomic to Micron Scales

Elder, Ken; Rossi, G.; Kanerva, P.; Sanches, F.; Ying, S-C.; Granato, E.; Achim, C.V.; Ala-Nissilä, T.

2013 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Anomalous fast dynamics of adsorbate overlayers near an incommensurate structural transition

Granato, E.; Ying, S.C.; Elder, Ken; Ala-Nissilä, T.

2013 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Bcc crystal-fluid interfacial free energy in Yukawa systems

Heinonen, V.; Mijailović, A.; Achim, C. V.; Ala-Nissilä, Tapio; Rozas, R.E.; Horbach, J.; Löwen, H.

2013 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Influence of Pore Friction on the Universal Aspects of Polymer Translocation

Ikonen, T.; Bhattacharya, A.; Ala-Nissilä, T.; Sung, W.

2013 in EPL (IOP Publishing Ltd.)

ISSN: 0295-5075

Influence of pore friction on the universal aspects of driven polymer translocation

Ikonen, T.; Bhattacharya, A.; Ala-Nissila, T.; Sung, W.

2013 in EPL (IOP Publishing Ltd.)

ISSN: 0295-5075

Distribution of Entropy Production in a Single-Electron Box

Koski, J.V.; Sagawa, T.; Saira, O.-P.; Yoon, Y.; Kutvonen, A.; Solinas, P.; Möttönen, M.; Ala-Nissila, T.; Pekola, J.P.

2013 in NATURE PHYSICS (NATURE PUBLISHING GROUP)

ISSN: 1745-2473

Optical Properties of Thermochromic VO2 Nanoparticles

Laaksonen, K.; Li, S.-Y.; Puisto, S.R.; Niklasson, G.A.; Ala-Nissilä, T.; Nieminen, R.M.

2013 in Nano-Optics for Enhancing Light-Matter Interactions on a Molecular Scale, NATO Science for Peace and Security Series B: Physics and Biophysics (Springer Verlag)

ISSN: 1874-6500

Influence of high-refractive-index oxide coating on optical properties of metal nanoparticles

Laaksonen, K.; Suomela, S.; Puisto, S.R.; Rostedt, N.K.J.; Ala-Nissilä, T.; Nieminen, R.M.

2013 in JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B: OPTICAL PHYSICS (OPTICAL SOC AMER)

ISSN: 0740-3224

Conformations of DNA in triangular nanochannels

Manneschi, C.; Angeli, E.; Ala-Nissilä, T.; Repetto, L.; Firpo, G.; Valbusa, U.

2013 in MACROMOLECULES (AMER CHEMICAL SOC)

ISSN: 0024-9297

Multiscale modeling of submonolayer growth for Fe/Mo(110)

Masin, M.; Kotrla, M.; Yang, B.; Asta, M.; Jahma, M.O.; Ala-Nissilä, T.

2013 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

ISSN: 1434-6028

Influence of Particle size and shape on turbulent heat transfer characterstics and pressure losses in water based nanofluids

Meriläinen, Arttu; Seppälä, Ari; Saari, Kari; Seitsonen, J.; Ruokolainen, J.; Puisto, S.; Rostedt, N.; Ala-Nissilä, T.

2013 in INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER (Elsevier Limited)

ISSN: 0017-9310

Influence of particle size and shape on turbulent heat transfer characteristics and pressure losses in water-based nanofluids

Meriläinen, Arttu; Seppälä, Ari; Saari, Kari; Seitsonen, Jani; Ruokolainen, Janne; Puisto, Sakari; Rostedt, Niko; Ala-Nissilä, Tapio

2013 in INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER (Elsevier Limited)

ISSN: 0017-9310

Hydrodynamic Effects on Confined Polymers

Ollila, S.T.T.; Denniston, C.; Karttunen, M.; Ala-Nissilä, T.

2013 in SOFT MATTER (ROYAL SOC CHEMISTRY)

ISSN: 1744-683X

The hydrodynamic radius of particles in the hybrid Lattice Boltzmann-Molecular Dynamics method

Ollila, S.T.T.; Smith, C.J.; Ala-Nissilä, T.; Denniston, C.

2013 in MULTISCALE MODELING AND SIMULATION (Society for Industrial and Applied Mathematics Publications)

ISSN: 1540-3459

One- and two-particle dynamics in microfluidic T-junctions

Ollila, S.T.T.; Denniston, C.; Ala-Nissilä, T.

2013 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Dissipated work and fluctuation relations for non-equilibrium single-electron transitions

Pekola, Jukka P.; Kutvonen, Aki; Ala-Nissila, Tapio

2013 in JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT (IOP PUBLISHING LTD)

Atomistic simulations of friction at an ice-ice interface

Samadashvili, N.; Reischl, B.; Hynninen, T.; Ala-Nissila, T.; Foster, A.S.

2013 in FRICTION (Springer International Publishing AG)

ISSN: 2223-7690

Aggregation in Colloidal Suspensions: Evaluation of the Role of Hydrodynamic Interactions by Means of Numerical Simulations

Tomilov, A.; Videcoq, A.; Cerbelaud, M.; Piechowiak, M.A.; Chartier, T.; Ala-Nissilä, T.; Bochicchio, D.; Ferrando, R.

2013 in Journal of Physical Chemistry B (AMER CHEMICAL SOC)

ISSN: 1520-6106

Electrostatic correlations in inhomogeneous charged fluids beyond loop expansion

Buyukdagli, S.; Achim, C.; Ala-Nissilä, T.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Excluded volume effects in macromolecular forces and ion-interface interactions

Buyukdagli, S.; Ala-Nissilä, T.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Dipolar depletion effect on the differential capacitance of carbon-based materials

Buyukdagli, S.; Ala-Nissilä, T.

2012 in EPL (IOP Publishing Ltd.)

ISSN: 0295-5075

Patterning of heteroepitaxial overlayers from nano to micron scales

Elder, Ken; Rossi, G.; Kanerva, P.; Sanches, F.; Ying, S-C.; Granato, E.; Achim, C.V.; Ala-Nissilä, T.

2012 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

A molecular dynamics implementation of the 3D Mercedes-Benz water model

Hynninen, T.; Dias, C.L.; Mkrtchyan, A.; Heinonen, V.; Karttunen, M.; Foster, A.S.; Ala-Nissila, T.

2012 in COMPUTER PHYSICS COMMUNICATIONS (Elsevier Science B.V.)

ISSN: 0010-4655

Influence of non-universal effects on dynamical scaling in driven polymer translocation

Ikonen, T.; Bhattacharya, A.; Ala-Nissilä, T.; Sung, W.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Unifying model of driven polymer translocation

Ikonen, T.; Bhattacharya, A.; Ala-Nissilä, T.; Sung, W.

2012 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Polymer translocation under time-dependent driving forces: resonant activation induced by attractive polymer-pore interactions

Ikonen, T.; Shin, J.; Ala-Nissilä, T.; Sung, W.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Correlations between mechanical, structural, and dynamical properties of polymer nanocomposites

Kutvonen, A.; Rossi, G.; Ala-Nissilä, T.

2012 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Influence of nanoparticle size, loading, and shape on the mechanical properties of polymer nanocomposites

Kutvonen, A.; Rossi, G.; Puisto, S.R.; Rostedt, N.K.; Ala-Nissilä, T.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Thermohydrodynamics of boiling in a van der Waals fluid

Laurila, T.; Carlson, A.; Do-Quang, M.; Ala-Nissilä, T.; Amberg, G.

2012 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Hydrodynamic forces on steady and oscillating porous particles

Ollila, S.T.T.; Ala-Nissilä, T.; Denniston, C.

2012 in JOURNAL OF FLUID MECHANICS (Cambridge University Press)

ISSN: 0022-1120

Molecular Dynamics Study of a MARTINI Coarse-Grained Polystyrene Brush in a Good Solvent: Structure and Dynamics

Rossi, G.; Elliott, I.G.; Ala-Nissilä, T.; Faller, R.

2012 in MACROMOLECULES (AMER CHEMICAL SOC)

ISSN: 0024-9297

Tracer diffusion in colloidal suspensions under dilute and crowded conditions with hydrodynamic interactions

Tomilov, A.; Videcoq, A.; Chartier, T.; Ala-Nissila, T.; Vattulainen, I.

2012 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Ion size effects upon ionic exclusion from dielectric interfaces and slit nanopores

Buyukdagli, Sahin; Achim, Christian; Ala-Nissilä, Tapio

2011 in JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT (IOP PUBLISHING LTD)

Hydrophobicity within the three-dimensional Mercedes-Benz model: Potential of mean force

Dias, Cristiano L.; Hynninen, Teemu; Ala-Nissila, Tapio; Foster, Adam S.; Karttunen, Mikko

2011 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Glassy phases and driven response of the phase-field-crystal model with random pinning

Granato, E.; Ramos, J.A.P.; Achim, C.V.; Lehikoinen, J.; Ying, S.C.; Ala-Nissila, T.; Elder, Ken

2011 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Diffusion in periodic potentials with path integral hyperdynamics

Ikonen, T.; Khandkar, M.D.; Chen, L.Y.; Ying, S.C.; Ala-Nissila, T.

2011 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Polymer translocation induced by a bad solvent

Lörscher, Christopher; Ala-Nissila, Tapio; Bhattacharya, Aniket

2011 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Fluctuating lattice-Boltzmann model for complex fluids

Ollila, Santtu T.T.; Denniston, C.; Karttunen, M.; Ala-Nissila, T.

2011 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

A MARTINI coarse-grained model of a thermoset polyester coating

Rossi, G.; Giannakopoulos, I.; Monticelli, L.; Rostedt, N.K.J.; Puisto, S.R.; Lowe, C.; Taylor, A.C.; Vattulainen, I.; Ala-Nissila, T.

2011 in MACROMOLECULES (AMER CHEMICAL SOC)

ISSN: 0024-9297

Coarse-graining polymers with the MARTINI force field: Polysterene as a benchmark case

Rossi, G.; Monticelli, L.; Puisto, S.R.; Vattulainen, I.; Ala-Nissilä, T.

2011 in SOFT MATTER (ROYAL SOC CHEMISTRY)

ISSN: 1744-683X

Reply to the comment by Graziano on [The hydrophobic effect and its role in cold denaturation]

Dias, Christiano L.; Ala-Nissilä, Tapio; Wong-Ekkabut, Jirasak; Vattulainen, Ilpo; Grant, Martin; Karttunen, Mikko

2010 in CRYOBIOLOGY (Academic Press Inc.)

Cutting Ice: Nanowire regelation

Hynninen, Teemu; Heinonen, Vili; Dias, Christian L.; Karttunen, Mikko; Foster, Adam S.; Ala-Nissila, Tapio

2010 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Eighth-order phase-field-crystal model for two-dimensional crystallization

Jaatinen, A.; Ala-Nissilä, Tapio

2010 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Phase field crystal study of symmetric tilt grain boundaries of iron

Jaatinen, A.; Achim, C.V.; Elder, Ken; Ala-Nissilä, Tapio

2010 in Technische Mechanik (Magdeburger Verein fur Technische Mechanik e.V.)

Extended phase diagram of the three-dimensional phase field crystal model

Jaatinen, Akusti; Ala-Nissilä, Tapio

2010 in JOURNAL OF PHYSICS: CONDENSED MATTER (IOP PUBLISHING LTD)

ISSN: 0953-8984

Stress release mechanisms for Cu on Pd(111) in the submonolayer and monolayer regimes

Jalkanen, Jari; Rossi, Giulia; Trushin, Oleg; Granato, Enzo; Ala-Nissilä, Tapio; Ying, See-Chen

2010 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Multiscale modelling of microstructure formation in polymer casting

Pitkänen, Timo; Majaniemi, S.; Ala-Nissilä, Tapio

2010 in Technische Mechanik (Magdeburger Verein fur Technische Mechanik e.V.)

ISSN: 0232-3869

Nonlinear response and dynamical transitions in a phase field crystal model for adsorbed overlayers

Ramos, Jorge A.P.; Granato, E.; Ying, S.C.; Achim, C.V.; Elder, Ken; Ala-Nissilä, T.

2010 in Journal of Physics: Conference Series (IOP Publishing Ltd.)

ISSN: 1742-6588

Dynamical transitions and sliding friction of the phase-field-crystal model with pinning

Ramos, J.A.P.; Granato, E.; Ying, S.C.; Achim, C.V.; Elder, Ken; Ala-Nissilä, T.

2010 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Polymer escape from a metastable Kramers potential: Path integral hyperdynamics study

Shin, Jaeoh; Ikonen, Timo; Khandkar, Mahendra D.; Ala-Nissilä, Tapio; Sung, Wokyung

2010 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Nonlinear driven response of a phase-field crystal in a periodic pinning potential

Achim, Cristian V.; Ramos, Jorge; Karttunen, Mikko; Elder, Ken; Granato, Enzo; Ala-Nissilä, Tapio; Ying, See-Chen

2009 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Scaling exponents of forced polymer translocation through a nanopore

Bhattacharya, Aniket; Morrison, William H.; Luo, Kaifu; Ala-Nissilä, Tapio; Ying, See-Chen; Milchev, Andrey; Binder, Kurt

2009 in European Physical Journal E (SPRINGER)

The hydrophobic effect and its role in cold denaturation

Dias, Cristiano L.; Ala-Nissilä, Tapio; Wong-Ekkabut, Jirasak; Vattulainen, Ilpo; Grant, Martin; Karttunen, Mikko

2009 in CRYOBIOLOGY (Academic Press Inc.)

Three-dimensional "Mercedes-Benz" model for water

Dias, Cristiano L.; Ala-Nissilä, Tapio; Grant, Martin; Karttunen, Mikko

2009 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Thermodynamics of bcc metals in phase-field-crystal models

Jaatinen, Akusti; Achim, C.V.; Elder, K.R.; Ala-Nissilä, T.

2009 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Driven polymer translocation through nanopores: Slow-vs.-fast dynamics

Luo, Kaifu; Ala-Nissilä, Tapio; Ying, See-Chen; Metzler, Ralf

2009 in Europhysics Letters (AMER PHYSICAL SOC)

Polymer translocation out of confined environments

Luo, Kaifu; Metzler, Ralf; Ala-Nissilä, Tapio; Ying, See-Chen

2009 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Polymer translocation in a double-force arrangement

Ollila, Santtu; Luo, Kaifu; Ala-Nissilä, Tapio; Ying, See-Chen

2009 in European Physical Journal E (SPRINGER)

Ordered structures and phase transitions in a phase field crystal model

Ramos, Jorge A.P.; Granato, Enzo; Achim, Cristian; Ying, See-Chen; Elder, Ken; Ala-Nissilä, Tapio

2009 in Journal of Computational Interdisciplinary Sciences (SPRINGER)

Diffusion-Controlled Anisotropic Growth of Stable and Metastable Crystal Polymorphs in the Phase-Field Crystal Model

Tegze, G.; Gránásy, L.; Tóth, G.I.; Podmaniczky, F.; Jaatinen, A.; Ala-Nissilä, T.; Pusztai, T.

2009 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Atomic studies of strain relaxation in heteroepitaxial systems

Trushin, Oleg; Jalkanen, Jari; Granato, Enzo; Ying, See-Chen; Ala-Nissilä, Tapio

2009 in JOURNAL OF PHYSICS: CONDENSED MATTER (IOP PUBLISHING LTD)

Electronic properties of H on vicinal Pt surfaces: First-principles study

Vehviläinen, Timo; Salo, Petri; Ala-Nissilä, Tapio; Ying, See-Chen

2009 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Phase diagram of pinned lattices in the phase field crystal model

Achim, Christian; Karttunen, Mikko; Elder, Ken; Granato, Enzo; Ala-Nissila, Tapio; Ying, See Chen

2008 in Journal of Physics: Conference Series (IOP Publishing Ltd.)

Microscopic Mechanism for Cold Denaturation

Dias, C.; Ala-Nissila, T.; Karttunen, M.; Vattulainen, Ilpo; Grant, M.

2008 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Equilibrium shape and size of supported heteroepitaxial nanoislands

Jalkanen, Jari; Trushin, Oleg; Granato, Enzo; Ying, See-Chen; Ala-Nissila, Tapio

2008 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

Two approaches to dislocation nucleation in the supported heteroepitaxial equilibrium islanding phenomenon

Jalkanen, Jari; Trushin, Oleg; Elder, Ken; Granato, Enzo; Ying, See-Chen; Ala-Nissila, Tapio

2008 in Journal of Physics: Conference Series (IOP Publishing Ltd.)

Influence of disorder strength on phase-field models of interfacial growth

Laurila, T.; Pradas, M.; Hernández-Machado, A.; Ala-Nissiä, T.

2008 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Dynamics of DNA translocation through an attractive nanopore

Luo, Kaifu; Ala-Nissilä, Tapio; Ying, See-Chen; Bhattacharya, Aniket

2008 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Sequence dependence of DNA translocation through a nanopore

Luo, Kaifu; Ala-Nissila, T.; Ying, S.C.; Bhattacharya, A.

2008 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Translocation Dynamics with Attractive Nanopore-Polymer Interactions

Luo, Kaifu; Ala-Nissila, Tapio; Ying, Chen; Bhattacharya, Aniket

2008 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Dynamical Scaling Exponents for Polymer Translocation through a Nanopore

Luo, Kaifu; Ollila, Santtu T.T.; Huopaniemi, Ilkka; Ala-Nissila, Tapio; Pomorski, Pawel; Karttunen, Mikko; Ying, See-Chen; Bhattacharya, Aniket

2008 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Thermal fluctuations and phase diagrams of the phase-field crystal model with pinning

Ramos, J.A.P.; Granato, E.; Achim, C.V.; Ying, S.C.; Elder, K.R.; Ala-Nissila, T.

2008 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Polymer translocation through a nanopore under a pulling force

Huopaniemi, I.; Luo, Kaifu; Ala-Nissila, T.; Ying, S.C.

2007 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Optimal conditions for submonolayer nanoisland growth in ion beam assisted deposition

Jahma, M.O.; Koponen, I.T.; Ala-Nissila, T.

2007 in Surface Science (Elsevier)

Polymer scaling and dynamics in steady-state sedimentation at infinite Peclet number

Lehtola, Ville; Punkkinen, O.; Ala-Nissilä, T.

2007 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Influence of polymer-pore interactions on translocation

Luo, Kaifu; Ala-Nissila, T.; Ying, S.C.; Bhattacharya, A.

2007 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Heteropolymer translocation through nanopores

Luo, K.; Ala-Nissila, T.; Ying, S.C.; Bhattacharya, A.

2007 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

ISSN: 0021-9606

Computer simulation studies for collective adatom stepped surfaces

Masin, Martin; Vattulainen, Ilpo; Ala-Nissila, Tapio; Chvoj, Zdenek

2007 in Focus in Surface Science Research (AMER INST PHYSICS)

Interplay between steps and non-equilibrium effects in surface diffusion for a lattice-gas model of O/W(110)

Masin, M.; Vattulainen, I.; Ala-Nissila, T.; Chvoj, Z.

2007 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Reaction kinetic model of height selection in heteroepitaxial growth of quantum dots

Rusanen, M.; Koponen, I.T.; Ala-Nissila, Tapio

2007 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

Phase diagram and commensurate-incommensurate transitions in the phase field crystal model with an external pinning potential

Achim, C. V.; Karttunen, M.; Elder, K. R.; Granato, E.; Ala-Nissilä, Tapio; Ying, S-C.

2006 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Theoretical Approaches to Collective Diffusion on Stepped Surfaces

Chvoj, Z.; Masin, M.; Ala-Nissila, T.

2006 in JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT (IOP PUBLISHING LTD)

Langevin Dynamics Simulations of Polymer Translocation through Nanopores

Huopaniemi, I.; Luo, K.; Ala-Nissila, T.; Ying, S.C.

2006 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Diffusion of small two-dimensional Cu islands on Cu(111) studied with a kinetic Monte Carlo method

Karim, Altaf; Al-Rawi, Ahlam N.; Kara, Abdelkader; Rahman, Talat S.; Trushin, Oleg; Ala-Nissilä, Tapio

2006 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Interface Equations for Capillary Rise in Random Environment

Laurila, T.; Tong, C.; Majaniemi, S.; Ala-Nissila, T.

2006 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Polymer translocation through a nanopore: a two-dimensional Monte Carlo study

Luo, K.; Ala-Nissila, Tapio; Ying, S.C.; Hynninen, Teemu

2006 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Polymer translocation through a nanopore under an applied external field

Luo, K.; Huopaniemi, I.; Ala-Nissila, T.; Ying, S.C.

2006 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Diffusion and submonolayer island growth during hyperthermal deposition on Cu(100) and Cu(111)

Jahma, M.O.; Rusanen, M.; Karim, A.; Koponen, I.T.; Ala-Nissila, T.; Rahman, T.S.

2005 in Surface Science (Elsevier)

Equilibrium shape and dislocation nucleation in strained epitaxial nanoislands.

Jalkanen, Jari; Trushin, Oleg; Granato, E.; Ying, See Chen; Ala-Nissila, Tapio

2005 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Dynamics and Kinetic Roughening of Interfaces in Two-Dimensional Forced Wetting

Laurila, T.; Tong, C.; Majaniemi, S.; Huopaniemi, I.; Ala-Nissila, T.

2005 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

Strain Relief in Cu-Pd Heteroepitaxy

Lu, Yafeng; Przybylski, M.; Trushin, O.; Wang, W.H.; Barthel, J.; Granato, E.; Ying, S.J.; Ala-Nissila, T.

2005 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Phase-field modeling of wetting on structured surface

Luo, K.; Kuittu, M.P.; Tong, C.; Majaniemi, S.; Ala-Nissila, T.

2005 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Non-equilibrium effects in diffusion of interacting particles on vicinal surfaces

Masin, M.; Vattulainen, I.; Ala-Nissila, T.; Chvoj, Z.

2005 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Dynamics and Scaling of Polymers in a Dilute Solution: Analytical Treatment in Two and Higher Dimensions

Punkkinen, O.; Falck, E.; Vattulainen, I.; Ala-Nissila, T.

2005 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Theory of collective diffusion in two-dimensional colloidal suspensions

Chvoj, Zdenek; Lahtinen, J.M.; Ala-Nissila, Tapio

2004 in JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT (IOP PUBLISHING LTD)

ISSN: 1742-5468

Influence of hydorynamics on many-particle diffusion in 2D colloidal suspensions

Falck, E.; Lahtinen, J.M.; Vattulainen, I.; Ala-Nissila, T.

2004 in European Physical Journal E (SPRINGER)

Fluctuations of surface steps in equilibrium: a kinetic Monte Carlo study

Karim, A.; Rusanen, M.; Koponen, I.T.; Ala-Nissila, T.; Rahman, T.S.

2004 in Surface Science (Elsevier)

Submonolayer growth with anomalously high island density in hyperthermal deposition

Koponen, I.T.; Jahma, Mika O.; Rusanen, M.; Ala-Nissila, T.

2004 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Sedimentation dynamics of spherical particles in confined geometries

Kuusela, E.; Lahtinen, J.M.; Ala-Nissila, T.

2004 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Origin of Non-Gaussian Velocity Fluctuations in Steady-State Sedimentation

Kuusela, E.; Lahtinen, J.M.; Ala-Nissilä, T.

2004 in Europhysics Letters (AMER PHYSICAL SOC)

Diffusion and mobility of interacting particles on stepped surfaces along the ledges

Masin, M.; Vattulainen, I.; Ala-Nissila, Tapio; Chvoj, Z.

2004 in Surface Science (Elsevier)

Searching for transition paths in multidimensional space with a fixed repulsive bias potential

Trushin, O.S.; Salo, Petri; Ala-Nissila, T.; Ying, S.C.

2004 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 1098-0121

Vibrational states of H monolayer on the Pt(111) surface

Badescu, S.C.; Jacobi, K.; Wang, Y.; Bedurftig, K.; Ertl, G.; Salo, P.; Ala-Nissila, T.; Ying, S.C.

2003 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Step effects on diffusion near a substrate reconstructive phase transition H on W(100)

Cai, Lei; Zheng, Chaozhi; Man, K.L.; Altman, M.S.; Granato, E.; Ala-Nissilä, Tapio; Ying, S-C.; Xiao, Xudong

2003 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 0163-1829

Dynamics and scaling of two-dimensional polymers in a dilute solution

Falck, E.; Punkkinen, O.; Vattulainen, I.; Ala-Nissilä, Tapio

2003 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Collective effects in settling of spheroids under steady-state sedimentation

Kuusela, E.; Lahtinen, J.M.; Ala-Nissilä, T.

2003 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Diffusion and mobility of interacting particles on stepped surfaces

Masin, M.; Vattulainen, I.; Ala-Nissila, T.; Chvoj, Z.

2003 in Surface Science (Elsevier)

Non-equilibrium effects in profile spreading on stepped surfaces

Masin, M.; Vattulainen, I.; Ala-Nissila, T.; Chvoj, Z.

2003 in Surface Science Letters (Elsevier)

Energetics and atomic mechanisms of dislocation nucleation in strained epitaxial layers

Trushin, O.; Granato, E.; Ying, S.C.; Salo, P.; Ala-Nissila, T.

2003 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Collective and Single Particle Diffusion on Surfaces

Ala-Nissila, T.; Ferrando, R.; Ying, S.C.

2002 in ADVANCES IN PHYSICS (Taylor and Francis Ltd.)

Exact and efficient discrete random walk method for time-dependent environments

Asikainen, J.; Heinonen, J.; Ala-Nissila, T.

2002 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Dynamical scaling and kinetic roughening of single valued fronts propagating in fractal media

Asikainen, J.; Majaniemi, S.; Dube, M.; Heinonen, J.; Ala-Nissila, T.

2002 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

Interface dynamics and kinetic roughening in fractals

Asikainen, Joonas; Majaniemi, S.; Dube, M.; Ala-Nissila, T.

2002 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Exact and efficient discrete random walk method for time-dependent two-dimensional environments

Asikainen, J.; Heinonen, J.; Ala-Nissilä, Tapio

2002 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1539-3755

Energetics and Vibrational States for Hydrogen on Pt(111)

Badescu, S.C.; Salo, P.; Ala-Nissila, T.; Ying, S.C.; Jacobi, K.; Wang, Y.; Bedurftig, K.; Ertl, G.

2002 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Surface Diffusion Anomaly Near Substrate Phase Transition: H on W(100)

Cai, L.; Altman, M.S.; Granato, E.; Ala-Nissila, T.; Ying, S.C.; Xiao, X.

2002 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Finding transition paths and rate coefficients through accelerated Langevin dynamics

Chen, L.; Ying, See-Chen; Ala-Nissila, Tapio

2002 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Time correlation and statistics of atomistic processes in island diffusion on fcc(100) metal surfaces

Heinonen, J.; Koponen, I.T.; Salo, P.; Ala-Nissila, T.

2002 in Surface Science (Elsevier)

Many-particle diffusion in continuum: Inluence of a periodic surface potential

Lahtinen, J.M.; Masin, M.; Laurila, T.; Ala-Nissilä, T.; Chvoj, Z.

2002 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Effects of quenched impurities on surface diffusion, spreading and ordering of O/W(110)

Nikunen, P.; Vattulainen, I.; Ala-Nissila, T.

2002 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Morphology of ledge patterns during step flow growth of metal surfaces vicinal to fcc(001)

Rusanen, M.; Koponen, I.T.; Ala-Nissila, T.; Ghosh, C.; Rahman, T.S.

2002 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Meandering instability of curved step edges on growth of a crystalline cone

Rusanen, M.; Koponen, I.T.; Ala-Nissila, T.

2002 in Surface Science (Elsevier)

Mechanisms of dislocation nucleation in strained epitaxial layers

Trushin, O.; Granato, R.; Ying, S.C.; Salo, P.; Ala-Nissila, T.

2002 in Physica Status Solidi B (Elsevier)

Minimum energy paths for dislocation nucleation in strained epitaxial layers

Trushin, O.; Granato, E.; Ying, S.C.; Salo, P.; Ala-Nissila, T.

2002 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Surface instability and dislocation nucleation in strained epitaxial layers

Trushin, O.; Granato, E.; Ying, S.C.; Kosterlitz, J.M.; Ala-Nissila, T.; Salo, P.

2002 in BRAZILIAN JOURNAL OF PHYSICS (Springer New York)

Quantum Diffusion of H/Ni(111) through Monte Carlo Wave Function Formalism

Badescu, S.; Ying, S.C.; Ala-Nissila, T.

2001 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Comment on Pipe Network Model for Scaling of Dynamic Interfaces in Porous Media

Dube, M.; Rost, M.; Elder, K.E.; Alava, M.; Majaniemi, S.; Ala-Nissila, T.

2001 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Interface pinning in spontaneous imbibition

Dube, M.; Majaniemi, S.; Rost, M.; Alava, MJ; Elder, KR; Ala-Nissilä, Tapio

2001 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

ISSN: 1063-651X

Dynamic Scaling in c(2 x 2) Reconstruction on W(001)

Falck, E.; Ala-Nissila, T.; Granato, E.; Ying, S.-C.

2001 in Surface Science (Elsevier)

How to measure velocity correlations from surface diffusion experiments by STM

Hjelt, T.; Vattulainen, I.; Lahtinen, J.M.; Ala-Nissilä, Tapio; Ying, S.-C.

2001 in Surface Science (Elsevier)

Velocity correlations and diffusion during sedimentation

Kuusela, Esa; Ala-Nissila, T.

2001 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Diffusion of hard disks and rodlike molecules on surfaces

Lahtinen, J.M.; Hjelt, T.; Ala-Nissila, T.; Chvoj, Z.

2001 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Kinetic Roughening in Slow Combustion of Paper

Myllys, M.; Maunuksela, J.; Alava, M.; Ala-Nissila, T.; Merikoski, J.; Timonen, J.

2001 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Density Profile Evolution and Nonequilibrium Effects in Partial and Full Spreading Measurements of Surface Diffusion

Nikunen, P.; Vattulainen, I.; Ala-Nissila, T.

2001 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Instability and wavelength selection during step flow growth of metal surfaces vicinal to fcc(001)

Rusanen, M.; Koponen, I.T.; Heinonen, J.; Ala-Nissila, T.

2001 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Role of concerted atomic movements on the diffusion of small islands on fcc(100) metal surfaces

Salo, P.; Hirvonen, J.; Koponen, I.T.; Trushin, O.S.; Heinonen, J.; Ala-Nissila, T.

2001 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Atomic mechanisms of cluster diffusion on metal fcc(100) surfaces

Trushin, O.S.; Salo, P.; Alatalo, M.; Ala-Nissila, T.

2001 in Surface Science (Elsevier)

Percolation and spatial correlations in a two-dimensional continuum deposition model

Asikainen, J.; Ala-Nissilä, T.

2000 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Conserved dynamics and interface roughening in spontaneous imbibition: A phase field model

Dubé, M.; Rost, M.; Elder, K.; Alava, M.; Majaniemi, S.; Ala-Nissilä, T.

2000 in EUROPEAN PHYSICAL JOURNAL B (SPRINGER)

Anomalous sliding friction and peak effect near the flux lattice melting transition

Granato, E.; Ala-Nissilä, T.; Ying, S.C.

2000 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Velocity correlations and memory functions in surface diffusion

Hjelt, T.; Vattulainen, I.; Ala-Nissilä, T.; Ying, S.C.

2000 in Surface Science Letters (AMER PHYSICAL SOC)

Diffusion of end-grafted polymer chains on surfaces

Hjelt, T.; Ala-Nissilä, T.

2000 in Surface Science (Elsevier)

Adatom dynamics in a periodic potential under a time-periodic bias

Kallunki, J.; Dubé, M.; Ala-Nissilä, T.

2000 in Surface Science (Elsevier)

Diffusive spreading of rodlike molecules on surfaces

Lahtinen, J.M.; Hjelt, T.; Ala-Nissilä, T.

2000 in Surface Science (Elsevier)

Scaling and noise in slow combustion of paper

Myllys, M.; Maunuksela, J.; Alava, M.J.; Ala-Nissilä, T.; Timonen, J.

2000 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Non-equilibrium effects in profile evolution measurements of surface diffusion

Nikunen, P.; Vattulainen, I.; Ala-Nissilä, T.

2000 in Surface Science Letters (AMERICAN PHYSICAL SOC)

Fiber deposition models in two and three spatial dimensions

Provatas, N.; Haataja, M.; Asikainen, J.; Majaniemi, S.; Alava, M.; Ala-Nissilä, T.

2000 in Colloids and Surfaces A (AMERICAN PHYSICAL SOC)

Energetics and many-particle mechanisms of two-dimensional cluster diffusion on Cu(100) surfaces

Trushin, O.; Salo, P.; Ala-Nissilä, T.

2000 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Comment on finite-size scaling behavior of the tracer surface diffusion coefficient near a second-order phase transition by Nieto et al.

Vattulainen, I.; Merikoski, J.; Ying, S.C.; Ala-Nissilä, T.

2000 in Europhysics Letters (AMER PHYSICAL SOC)

Non-exponential dacay of velocity correlations in surface diffusion: The role of interactions and ordering

Vattulainen, I.; Hjelt, T.; Ala-Nissilä, T.; Ying, S.C

2000 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Do tree stems shrink and swell with the tides?

Vesala, T.; Sevanto, S.; Paatero, P.; Nikinmaa, E.; Perämäki, M.; Ala-Nissilä, Tapio; Kääriäinen, J.; Virtanen, H.; Irvine, J.; Grace, J.

2000 in TREE PHYSIOLOGY (Oxford University Press)

Liquid conservation and nonlocal interface dynamics in imbition

Dubé, M.; Rost, M.; Elder, K.R.; Alava, M.; Majaniemi, S.; Ala-Nissila, T.

1999 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Island diffusion on metal fcc(100) surfaces

Heinonen, J.; Koponen, I.; Merikoski, J.; Ala-Nissila, T.

1999 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Stochastic resonance and diffusion in periodic potentials

Kallunki, J.; Dubé, M.; Ala-Nissila, T.

1999 in JOURNAL OF PHYSICS: CONDENSED MATTER (IOP PUBLISHING LTD)

Dynamics of driven interfaces in algebraically correlated random media

Kuittu, M.-P.; Haataja, M.; Ala-Nissila, T.

1999 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Kardar-Parisi-Zhang scaling in kinetic roughening of fire fronts

Maunuksela, J.; Myllys, M.; Timonen, J.; Alava, M.J.; Ala-Nissila, T.

1999 in Physica A (AMER PHYSICAL SOC)

Energetics and diffusion of Ga and As adatoms on flat and stepped GaAs(001) surfaces

Salmi, M.; Alatalo, M.; Ala-Nissila, T.; Nieminen, R.M.

1999 in Surface Science (Elsevier)

Memory effects and coverage dependence of surface diffusion in a model adsorption system

Vattulainen, I.; Ying, S.C.; Ala-Nissila, T.; Merikoski, J.

1999 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Comment on Surface diffusion near the points corresponding to continuous phase transitions

Vattulainen, I.; Ying, S.C.; Ala-Nissila, T.; Merikoski, J.

1999 in JOURNAL OF CHEMICAL PHYSICS (AMER INST PHYSICS)

Comment on "Upper critical dimension of the Kardar-Parisi-Zhang equation"

Ala-Nissilä, T.

1998 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Erratum: Comment on "Upper critical dimension of the Kardar-Parisi-Zhang equation"

Ala-Nissilä, T.

1998 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

A simple model for anisotropic step growth

Heinonen, J.; Bukharev, I.; Ala-Nissilä, T.; Kosterlitz, J.M.

1998 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Dynamics of chainlike molecules of surfaces

Hjelt, T.S.; Herminghaus, S.; Ala-Nissilä, T.; Ying, S.C.

1998 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Nucleation, growth, and scaling in slow combustion

Karttunen, M.; Provatas, N.; Ala-Nissilä, T.; Grant, M.

1998 in JOURNAL OF STATISTICAL PHYSICS (Springer New York)

ISSN: 0022-4715

Dynamics of driven interfaces near isotropic percolation transition

Kuittu, M.-P.; Haataja, M.; Provatas, N.; Ala-Nissilä, T.

1998 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Comment on "kinetic roughening in slow combustion of paper" - Maunuksela et al reply

Maunuksela, J.; Myllys, M.; Timonen, J; Kuittu, M.; Ala-Nissilä, Tapio; Alava, MJ; Provatas, N.

1998 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Reply to the comment of Makse and Amaral

Maunuksela, J.; Myllys, J.; Timonen, J.; Ala-Nissilä, T.; Kuittu, M.; Alava, M.J.; Provatas, N.

1998 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Adatom dynamics and diffusion in a model of O/W(110)

Vattulainen, I.; Merikoski, J.; Ala-Nissilä, T.; Ying, S.C.

1998 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Comment on "Non-Arrhenius behavior of surface diffusion near a phase transition boundary" - Reply

Vattulainen, Ilpo; Merikoski, J.; Ala-Nissilä, Tapio; Ying, S.C.

1998 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

ISSN: 0031-9007

Kinetic roughening in fiber deposition

Vinnurva, J.; Alava, M.; Ala-Nissilä, T.; Krug, J.

1998 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Memory expansion for diffusion coefficients

Ying, S.C.; Vattulainen, I.; Merikoski, J.; Hjelt, T.; Ala-Nissilä, T.

1998 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

Kinetic roughening in slow combustion of paper

Maunuksela, J.; Myllys, M.; Timonen, J.; Kähkönen, O.-P.; Provatas, N.; Alava, M.J.; Ala-Nissilä, T.

1997 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Growth, percolation, and correlations in disordered fiber networks

Provatas, N.; Haataja, M.; Seppälä, E.; Majaniemi, S.; Åström, J.; Alava, M.; Ala-Nissilä, T.

1997 in JOURNAL OF STATISTICAL PHYSICS (Springer New York)

Structural properties of disordered fibre networks

Provatas, N.; Haataja, M.; Seppälä, E.; Majaniemi, S.; Alava, M.; Ala-Nissilä, T.

1997 in PHYSICA A: STATISTICAL MECHANICS AND ITS APPLICATIONS (Elsevier Science B.V.)

ISSN: 0378-4371

Density correlations in paper

Provatas, N.; Alava, M.J.; Ala-Nissilä, T.

1996 in PHYSICAL REVIEW E (AMER PHYSICAL SOC)

Growth and structure of Random fibre clusters and cluster networks

Provatas, N.; Ala-Nissilä, T.; Alava, M.J.

1995 in PHYSICAL REVIEW LETTERS (AMERICAN PHYSICAL SOC)

Morphological Changes of Small Viscous Droplets under Spreading

Venäläinen, O.; Ala-Nissilä, Tapio; Kaski, Kimmo

1994 in Europhysics Letters (AMERICAN PHYSICAL SOC)

Simulations of solid-on-solid models of spreading of viscous droplets

Venäläinen, O.; Ala-Nissilä, Tapio; Kaski, Kimmo

1994 in PHYSICA A: STATISTICAL MECHANICS AND ITS APPLICATIONS (Elsevier Science B.V.)

ISSN: 0378-4371

A note on the kinetics of wetting transitions in two-dimensional lattice-gas systems

Ala-Nissilä, Tapio; Kankaala, Kari; Kaski, Kimmo

1989 in Journal of Physics A: Mathematical and General (IOP Publishing Ltd.)

ISSN: 0305-4470

Domain growth and topological defects in an Ising model with competing interactions

Ala-Nissilä, Tapio; Gunton, J. D.; Kaski, Kimmo

1988 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 0163-1829

Kinetics of the order-disorder transition of the two-dimensional anisotropic next-nearest-neighbor Ising model with Kawasaki dynamics

Ala-Nissilä, Tapio; Gunton, J. D.; Kaski, Kimmo

1986 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 0163-1829

Kinetics of the order-disorder transition of the two-dimensional anisotropic next-nearest-neighbor Ising model

Kaski, Kimmo; Ala-Nissilä, Tapio; Gunton, J. D.

1985 in PHYSICAL REVIEW B (AMER PHYSICAL SOC)

ISSN: 0163-1829

Review article, Literature review, Systematic review

Polymer translocation: the first two decades and the recent diversification

Palyulin, Vladimir V.; Ala-Nissilä, Tapio; Metzler, Ralf

2014 in SOFT MATTER (ROYAL SOC CHEMISTRY)

ISSN: 1744-683X

Book section, Chapters in research books

Phase-field modeling of dynamical interface phenomena in fluids

Ala-Nissila, Tapio; Majaniemi, Sami; Elder, Ken

2004

Conference proceedings

Convective heat transfer performance of polystyrene, SiO2, Al2O3 and micelle nanofluids

Mikkola, Valtteri; Puupponen, Salla; Granbohm, Henrika; Saari, Kari; Ala-Nissilä, Tapio; Seppälä, Ari

2016

ISBN: 978-1-77592-124-0

Facile preparation of concentrated silver and copper heat transfer nanocolloids

Puupponen, Salla; Granbohm, Henrika; Haimi, Eero; Ge, Yanling; Ala-Nissilä, Tapio; Seppälä, Ari

2016

ISBN: 978-1-77592-124-0

Preparation of Paraffin and Fatty Acid Nanofluids for Heat Transfer Applications

Puupponen, S.; Seppälä, A.; Saari, K.; Ala-Nissilä, T.

2014

ISBN: 978-952-12-3099-8

Memory Effects and Memory Functions in Surface Diffusion

Hjelt, T.; Kuusela, E.; Lahtinen, J.M.; Ala-Nissila, Tapio; Vattulainen, I.; Ying, S.C.

2001

Adatom island diffusion on metal fcc(100) surfaces

Trushin, O.S.; Hirvonen, J.; Heinonen, J.; Salo, P.; Alatalo, M.; Ala-Nissila, T.; Koponen, I.; Merikoski, J.

2001

Nonlinear Diffusion and Sliding Friction

Ying, S.C.; Granato, E.; Ala-Nissila, T.

2001

Stochastic resonance in adatom diffusion on crystal surfaces

Hernandez-Garcia, E.; Ala-Nissilä, T.; Colet, P.; Dube, M.; Majaniemi, S.

1998

Publications intended for professional communities

Article in professional conference proceedings

Characterisation of the Electrodynamic Response of Plasmonic Nano-particles

Tzarouchis, Dimitrios; Ylä-Oijala, Pasi; Sihvola, Ari; Ala-Nissilä, Tapio

2015

ISBN: 978-2-9545460-7-0

Published development or research report

Redshifting silver glare: Nanoparticle morphology and plasmonic resonances

Sihvola, Ari; Ylä-Oijala, Pasi; Tzarouchis, Dimitrios C.; Vartia, Olli; Seppälä, Ari; Haimi, Eero; Ala-Nissilä, Tapio

2015

Preparation of Phase Change Material Nanofluids for Heat Transfer Applications

Puupponen, Salla; Seppälä, Ari; Saari, Kari; Ala-Nissila, Tapio

2014

Lämpöeristeen moniskaalamalli

Seppälä, Ari; Saari, Kari; Noponen, Tuula; Ala-Nissilä, Tapio

2012

Optimal conditions for submonolayer nanoisland growth in ion beam assisted deposition

Jahma, Mika O.; Koponen, Ismo T.; Ala-Nissila, Tapio

2008